#.......# 
 S.......S 
  T.....E 
    R.Q 
     U 
    E.C 
  N.....T 
 C.......U 
 #.......R
  E.....E 
    S.S

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SheeP
Sheet Puzzle (ver. beta.1603061903)
SheeP displays schemes of β-sheet called draws β-sheet maps
Older version of SheeP is available.
Outline of SheeP algorithm: 1. Protein structure in PDB format is taken as input. 2. Secondary structures are detected. 3. β-sheet maps are created. 4. Maps are modified.

Select contacts of sheet sht_

 

Job done!
Status: maps builded
File name: 2v72.pdb
Output:
 Show sheet maps help
Color sheet sides:
     by Cα → Cβ direction
     by Cα location (up or down the sheet)
hide contacts
help
   Download results:  XMAP (XML)  Reports  Maps  Script  Everything
Sheet sht_0, map_0 You can mark contacts or  flip rows or columns
                    val88:A glu89:A thr90:A leu91:A val92:A ala93:A glu94:A gly95:A  thr96:A   
                   asn85:A ile84:A ala83:A his82:A  ile81:A glu80:A tyr79:A  lys78:A thr77:A ile76:A
  lys104:A thr105:A val106:A thr107:A phe108:A asp109:A ser110:A pro111:A ile112:A asp113:A ala114:A     glu115:A glu116:A ile117:A lys118:A  ile119:A thr120:A ala121:A ile122:A gln123:A  gly124:A
thr66:A ile65:A ala64:A ile63:A ser62:A ser61:A     val60:A lys59:A arg58:A ala57:A lys56:A gly55:A leu54:A asn53:A val52:A ser51:A  leu50:A ser49:A gln48:A     
glu133:A leu134:A asn135:A val136:A tyr137:A               thr12:A ala13:A ser14:A  ala15:A        
      ala5:A                            

Sheet sht_1, map_1 You can mark contacts or  flip rows or columns
asp22:A
glu19:A

Sheet sht_2, map_2  You can mark contacts or  flip rows or columns
ile131:A ser130:A
trp36:A his37:A

Beta-sheets
sht_idmap_idsadjust_alpha_layer_redadjust_alpha_layer_yellow
 sht_0 map_0  
 sht_1 map_1  
 sht_2 map_2  

Secondary structure elements
sse_idstrand/helix_idsse_lenfromtomap_idrow_idfrom_colto_colstrand_ori
 sse_0 str_01ALA5:AALA5:A map_0544right-left
 sse_1 str_14THR12:AALA15:A map_041620right-left
 sse_2 str_21GLU19:AGLU19:A map_1100right-left
 sse_3 str_31ASP22:AASP22:A map_1000right-left
 sse_4 str_42TRP36:AHIS37:A map_2101right-left
 sse_5 str_519THR66:AGLN48:A map_03022left-right
 sse_6 str_610ASN85:AILE76:A map_011526left-right
 sse_7 str_79VAL88:ATHR96:A map_001524right-left
 sse_8 str_821LYS104:AGLY124:A map_02126right-left
 sse_9 str_92ILE131:ASER130:A map_2001left-right
 sse_10 str_105GLU133:ATYR137:A map_0404right-left

Contact: evaksianov@gmail.com
Please, cite: Aksianov E., Alexeevski A. SheeP: A Tool for Description of β-Sheets in Protein 3D Structures. J. Bioinform. Comput. Biol. 2012. 10(2).

© Evgeniy Aksianov

Work on this service is supported by Russian Foundation of Basic Research, grants 13-07-00969 and 14-04-31709_mol_a.